Project

Contained within this file are experimental interfaces for working with the Synapse Python Client. Unless otherwise noted these interfaces are subject to change at any time. Use at your own risk.

Example Script

Working with a project

"""
Expects that ~/temp exists and is a directory.

The purpose of this script is to demonstrate how to use the new OOP interface for projects.
The following actions are shown in this script:
1. Creating a project
2. Retrieving a project by id or name
3. Upserting data on a project
4. Storing several files to a project
5. Storing several folders in a project
6. Updating the annotations in bulk for a number of folders and files
7. Downloading an entire project structure to disk
8. Copy a project and all content to a new project
9. Deleting a project
"""

import os
import uuid
from datetime import date, datetime, timedelta, timezone

import synapseclient
from synapseclient.models import File, Folder, Project

syn = synapseclient.Synapse(debug=True)
syn.login()


def create_random_file(
    path: str,
) -> None:
    """Create a random file with random data."""
    with open(path, "wb") as f:
        f.write(os.urandom(1))


def store_project():
    # Creating annotations for my project ==================================================
    my_annotations = {
        "my_single_key_string": "a",
        "my_key_string": ["b", "a", "c"],
        "my_key_bool": [False, False, False],
        "my_key_double": [1.2, 3.4, 5.6],
        "my_key_long": [1, 2, 3],
        "my_key_date": [date.today(), date.today() - timedelta(days=1)],
        "my_key_datetime": [
            datetime.today(),
            datetime.today() - timedelta(days=1),
            datetime.now(tz=timezone(timedelta(hours=-5))),
            datetime(2023, 12, 7, 13, 0, 0, tzinfo=timezone(timedelta(hours=0))),
            datetime(2023, 12, 7, 13, 0, 0, tzinfo=timezone(timedelta(hours=-7))),
        ],
        "annotation_i_want_to_delete": "I want to delete this annotation",
    }

    # 1) Creating a project ==============================================================
    project = Project(
        name="my_new_project_for_testing",
        annotations=my_annotations,
        description="This is a project with random data.",
        alias="my_project_alias_" + str(uuid.uuid4()).replace("-", "_"),
    )

    project = project.store()

    print(f"Project created with id: {project.id}")

    # 2) Retrieving a project by id or name ==============================================
    project = Project(name="my_new_project_for_testing").get()
    print(f"Project retrieved by name: {project.name} with id: {project.id}")

    project = Project(id=project.id).get()
    print(f"Project retrieved by id: {project.name} with id: {project.id}")

    # 3) Upserting data on a project =====================================================
    # When you have not already use `.store()` or `.get()` on a project any updates will
    # be a non-destructive upsert. This means that if the project does not exist it will
    # be created, if it does exist it will be updated.
    project = Project(
        name="my_new_project_for_testing", description="my new description"
    ).store()
    print(f"Project description updated to {project.description}")

    # After the instance has interacted with Synapse any changes will be destructive,
    # meaning changes in the data will act as a replacement instead of an addition.
    print(f"Annotations before update: {project.annotations}")
    del project.annotations["annotation_i_want_to_delete"]
    project = project.store()
    print(f"Annotations after update: {project.annotations}")

    # 4) Storing several files to a project ==============================================
    files_to_store = []
    for loop in range(1, 10):
        name_of_file = f"my_file_with_random_data_{loop}.txt"
        path_to_file = os.path.join(os.path.expanduser("~/temp"), name_of_file)
        create_random_file(path_to_file)

        file = File(
            path=path_to_file,
            name=name_of_file,
            annotations=my_annotations,
        )
        files_to_store.append(file)
    project.files = files_to_store
    project = project.store()

    # 5) Storing several folders in a project ============================================
    folders_to_store = []
    for loop in range(1, 10):
        folder_to_store = Folder(
            name=f"my_folder_for_this_project_{loop}",
            annotations=my_annotations,
        )
        folders_to_store.append(folder_to_store)
    project.folders = folders_to_store
    print(
        f"Storing project ({project.id}) with {len(project.folders)} folders and {len(project.files)} files"
    )
    project = project.store()

    # 6) Updating the annotations in bulk for a number of folders and files ==============
    project_copy = Project(id=project.id).sync_from_synapse(download_file=False)

    print(
        f"Found {len(project_copy.files)} files and {len(project_copy.folders)} folder at the root level for {project_copy.name} with id: {project_copy.id}"
    )

    new_annotations = {
        "my_new_key_string": ["b", "a", "c"],
    }

    for file in project_copy.files:
        file.annotations = new_annotations

    for folder in project_copy.folders:
        folder.annotations = new_annotations

    project_copy.store()

    # 7) Downloading an entire project structure to disk =================================
    print(f"Downloading project ({project.id}) to ~/temp")
    Project(id=project.id).sync_from_synapse(
        download_file=True, path="~/temp/recursiveDownload", recursive=True
    )

    # 8) Copy a project and all content to a new project =================================
    project_to_delete = Project(
        name="my_new_project_I_want_to_delete_" + str(uuid.uuid4()).replace("-", "_"),
    ).store()
    print(f"Project created with id: {project_to_delete.id}")

    project_to_delete = project.copy(destination_id=project_to_delete.id)
    print(
        f"Copied to new project, copied {len(project_to_delete.folders)} folders and {len(project_to_delete.files)} files"
    )

    # 9) Deleting a project ==============================================================
    project_to_delete.delete()
    print(f"Project with id: {project_to_delete.id} deleted")


store_project()

API reference

synapseclient.models.Project dataclass

Bases: ProjectSynchronousProtocol, AccessControllable, StorableContainer, ContainerEntityJSONSchema

A Project is a top-level container for organizing data in Synapse.

ATTRIBUTE	DESCRIPTION
id	The unique immutable ID for this project. A new ID will be generated for new Projects. Once issued, this ID is guaranteed to never change or be re-issued TYPE: Optional[str]
name	The name of this project. Must be 256 characters or less. Names may only contain: letters, numbers, spaces, underscores, hyphens, periods, plus signs, apostrophes, and parentheses TYPE: Optional[str]
description	The description of this entity. Must be 1000 characters or less. TYPE: Optional[str]
etag	Synapse employs an Optimistic Concurrency Control (OCC) scheme to handle concurrent updates. Since the E-Tag changes every time an entity is updated it is used to detect when a client's current representation of an entity is out-of-date. TYPE: Optional[str]
created_on	The date this entity was created. TYPE: Optional[str]
modified_on	The date this entity was last modified. TYPE: Optional[str]
created_by	The ID of the user that created this entity. TYPE: Optional[str]
modified_by	The ID of the user that last modified this entity. TYPE: Optional[str]
alias	The project alias for use in friendly project urls. TYPE: Optional[str]
files	Any files that are at the root directory of the project. TYPE: List[File]
folders	Any folders that are at the root directory of the project. TYPE: List[Folder]
tables	Any tables that are at the root directory of the project. TYPE: List[Table]
entityviews	Any entity views that are at the root directory of the project. TYPE: List[EntityView]
submissionviews	Any submission views that are at the root directory of the project. TYPE: List[SubmissionView]
datasets	Any datasets that are at the root directory of the project. TYPE: List[Dataset]
datasetcollections	Any dataset collections that are at the root directory of the project. TYPE: List[DatasetCollection]
materializedviews	Any materialized views that are at the root directory of the project. TYPE: List[MaterializedView]
virtualtables	Any virtual tables that are at the root directory of the project. TYPE: List[VirtualTable]
annotations	Additional metadata associated with the folder. The key is the name of your desired annotations. The value is an object containing a list of values (use empty list to represent no values for key) and the value type associated with all values in the list. To remove all annotations set this to an empty dict {} or None and store the entity. TYPE: Optional[Dict[str, Union[List[str], List[bool], List[float], List[int], List[date], List[datetime]]]]
create_or_update	(Store only) Indicates whether the method should automatically perform an update if the resource conflicts with an existing Synapse object. When True this means that any changes to the resource will be non-destructive. This boolean is ignored if you've already stored or retrieved the resource from Synapse for this instance at least once. Any changes to the resource will be destructive in this case. For example if you want to delete the content for a field you will need to call .get() and then modify the field. TYPE: bool
parent_id	The parent ID of the project. In practice projects do not have a parent, but this is required for the inner workings of Synapse. TYPE: Optional[str]

Creating a project

This example shows how to create a project

from synapseclient.models import Project, File
import synapseclient

synapseclient.login()

my_annotations = {
    "my_single_key_string": "a",
    "my_key_string": ["b", "a", "c"],
}
project = Project(
    name="My unique project name",
    annotations=my_annotations,
    description="This is a project with random data.",
)

project = project.store()

print(project)

Storing several files to a project

This example shows how to store several files to a project

file_1 = File(
    path=path_to_file_1,
    name=name_of_file_1,
)
file_2 = File(
    path=path_to_file_2,
    name=name_of_file_2,
)
project.files = [file_1, file_2]
project = project.store()

Source code in synapseclient/models/project.py

@dataclass()
@async_to_sync
class Project(
    ProjectSynchronousProtocol,
    AccessControllable,
    StorableContainer,
    ContainerEntityJSONSchema,
):
    """A Project is a top-level container for organizing data in Synapse.

    Attributes:
        id: The unique immutable ID for this project. A new ID will be generated for new
            Projects. Once issued, this ID is guaranteed to never change or be re-issued
        name: The name of this project. Must be 256 characters or less. Names may only
            contain: letters, numbers, spaces, underscores, hyphens, periods, plus
            signs, apostrophes, and parentheses
        description: The description of this entity. Must be 1000 characters or less.
        etag: Synapse employs an Optimistic Concurrency Control (OCC) scheme to handle
            concurrent updates. Since the E-Tag changes every time an entity is updated
            it is used to detect when a client's current representation of an entity
            is out-of-date.
        created_on: The date this entity was created.
        modified_on: The date this entity was last modified.
        created_by: The ID of the user that created this entity.
        modified_by: The ID of the user that last modified this entity.
        alias: The project alias for use in friendly project urls.
        files: Any files that are at the root directory of the project.
        folders: Any folders that are at the root directory of the project.
        tables: Any tables that are at the root directory of the project.
        entityviews: Any entity views that are at the root directory of the project.
        submissionviews: Any submission views that are at the root directory of the project.
        datasets: Any datasets that are at the root directory of the project.
        datasetcollections: Any dataset collections that are at the root directory of the project.
        materializedviews: Any materialized views that are at the root directory of the project.
        virtualtables: Any virtual tables that are at the root directory of the project.
        annotations: Additional metadata associated with the folder. The key is the name
            of your desired annotations. The value is an object containing a list of
            values (use empty list to represent no values for key) and the value type
            associated with all values in the list. To remove all annotations set this
            to an empty dict `{}` or None and store the entity.
        create_or_update: (Store only) Indicates whether the method should
            automatically perform an update if the resource conflicts with an existing
            Synapse object. When True this means that any changes to the resource will
            be non-destructive.

            This boolean is ignored if you've already stored or retrieved the resource
            from Synapse for this instance at least once. Any changes to the resource
            will be destructive in this case. For example if you want to delete the
            content for a field you will need to call `.get()` and then modify the
            field.
        parent_id: The parent ID of the project. In practice projects do not have a
            parent, but this is required for the inner workings of Synapse.

    Example: Creating a project
        This example shows how to create a project

            from synapseclient.models import Project, File
            import synapseclient

            synapseclient.login()

            my_annotations = {
                "my_single_key_string": "a",
                "my_key_string": ["b", "a", "c"],
            }
            project = Project(
                name="My unique project name",
                annotations=my_annotations,
                description="This is a project with random data.",
            )

            project = project.store()

            print(project)

    Example: Storing several files to a project
        This example shows how to store several files to a project

            file_1 = File(
                path=path_to_file_1,
                name=name_of_file_1,
            )
            file_2 = File(
                path=path_to_file_2,
                name=name_of_file_2,
            )
            project.files = [file_1, file_2]
            project = project.store()

    """

    id: Optional[str] = None
    """The unique immutable ID for this project. A new ID will be generated for new
    Projects. Once issued, this ID is guaranteed to never change or be re-issued"""

    name: Optional[str] = None
    """The name of this project. Must be 256 characters or less. Names may only contain:
    letters, numbers, spaces, underscores, hyphens, periods, plus signs, apostrophes,
    and parentheses"""

    description: Optional[str] = None
    """The description of this entity. Must be 1000 characters or less."""

    etag: Optional[str] = None
    """Synapse employs an Optimistic Concurrency Control (OCC) scheme to handle
    concurrent updates. Since the E-Tag changes every time an entity is updated it
    is used to detect when a client's current representation of an entity is out-of-date."""

    created_on: Optional[str] = field(default=None, compare=False)
    """(Read Only) The date this entity was created."""

    modified_on: Optional[str] = field(default=None, compare=False)
    """(Read Only) The date this entity was last modified."""

    created_by: Optional[str] = field(default=None, compare=False)
    """(Read Only) The ID of the user that created this entity."""

    modified_by: Optional[str] = field(default=None, compare=False)
    """(Read Only) The ID of the user that last modified this entity."""

    alias: Optional[str] = None
    """The project alias for use in friendly project urls."""

    files: List["File"] = field(default_factory=list, compare=False)
    """Any files that are at the root directory of the project."""

    folders: List["Folder"] = field(default_factory=list, compare=False)
    """Any folders that are at the root directory of the project."""

    tables: List["Table"] = field(default_factory=list, compare=False)
    """Any tables that are at the root directory of the project."""

    entityviews: List["EntityView"] = field(default_factory=list, compare=False)
    """Any entity views that are at the root directory of the project."""

    submissionviews: List["SubmissionView"] = field(default_factory=list, compare=False)
    """Any submission views that are at the root directory of the project."""

    datasets: List["Dataset"] = field(default_factory=list, compare=False)
    """Any datasets that are at the root directory of the project."""

    datasetcollections: List["DatasetCollection"] = field(
        default_factory=list, compare=False
    )
    """Any dataset collections that are at the root directory of the project."""

    materializedviews: List["MaterializedView"] = field(
        default_factory=list, compare=False
    )
    """Any materialized views that are at the root directory of the project."""

    virtualtables: List["VirtualTable"] = field(default_factory=list, compare=False)
    """Any virtual tables that are at the root directory of the project."""

    annotations: Optional[
        Dict[
            str,
            Union[
                List[str],
                List[bool],
                List[float],
                List[int],
                List[date],
                List[datetime],
            ],
        ]
    ] = field(default_factory=dict, compare=False)
    """Additional metadata associated with the folder. The key is the name of your
    desired annotations. The value is an object containing a list of values
    (use empty list to represent no values for key) and the value type associated with
    all values in the list. To remove all annotations set this to an empty dict `{}`
    or None and store the entity."""

    create_or_update: bool = field(default=True, repr=False)
    """
    (Store only)

    Indicates whether the method should automatically perform an update if the resource
    conflicts with an existing Synapse object. When True this means that any changes
    to the resource will be non-destructive.

    This boolean is ignored if you've already stored or retrieved the resource from
    Synapse for this instance at least once. Any changes to the resource will be
    destructive in this case. For example if you want to delete the content for a field
    you will need to call `.get()` and then modify the field.
    """

    parent_id: Optional[str] = None
    """The parent ID of the project. In practice projects do not have a parent, but this
    is required for the inner workings of Synapse."""

    _last_persistent_instance: Optional["Project"] = field(
        default=None, repr=False, compare=False
    )
    """The last persistent instance of this object. This is used to determine if the
    object has been changed and needs to be updated in Synapse."""

    _synced_from_synapse: Optional[bool] = field(
        default=False, repr=False, compare=False
    )
    """Whether this object has been synced from Synapse. This is used to determine if
    `.sync_from_synapse_async` has already been called on this instance."""

    @property
    def has_changed(self) -> bool:
        """Determines if the object has been changed and needs to be updated in Synapse."""
        return (
            not self._last_persistent_instance or self._last_persistent_instance != self
        )

    def _set_last_persistent_instance(self) -> None:
        """Stash the last time this object interacted with Synapse. This is used to
        determine if the object has been changed and needs to be updated in Synapse."""
        del self._last_persistent_instance
        self._last_persistent_instance = replace(self)
        self._last_persistent_instance.annotations = (
            deepcopy(self.annotations) if self.annotations else {}
        )

    def fill_from_dict(
        self,
        synapse_project: Union[Synapse_Project, Dict],
        set_annotations: bool = True,
    ) -> "Project":
        """
        Converts a response from the REST API into this dataclass.

        Arguments:
            synapse_project: The response from the REST API.

        Returns:
            The Project object.
        """
        self.id = synapse_project.get("id", None)
        self.name = synapse_project.get("name", None)
        self.description = synapse_project.get("description", None)
        self.etag = synapse_project.get("etag", None)
        self.created_on = synapse_project.get("createdOn", None)
        self.modified_on = synapse_project.get("modifiedOn", None)
        self.created_by = synapse_project.get("createdBy", None)
        self.modified_by = synapse_project.get("modifiedBy", None)
        self.alias = synapse_project.get("alias", None)
        self.parent_id = synapse_project.get("parentId", None)
        if set_annotations:
            self.annotations = Annotations.from_dict(
                synapse_project.get("annotations", {})
            )
        return self

    @otel_trace_method(
        method_to_trace_name=lambda self, **kwargs: f"Project_Store: ID: {self.id}, Name: {self.name}"
    )
    async def store_async(
        self,
        failure_strategy: FailureStrategy = FailureStrategy.LOG_EXCEPTION,
        *,
        synapse_client: Optional[Synapse] = None,
    ) -> "Project":
        """
        Store project, files, and folders to synapse. If you have any files or folders
        attached to this project they will be stored as well. You may attach files
        and folders to this project by setting the `files` and `folders` attributes.

        By default the store operation will non-destructively update the project if
        you have not already retrieved the project from Synapse. If you have already
        retrieved the project from Synapse then the store operation will be destructive
        and will overwrite the project with the current state of this object. See the
        `create_or_update` attribute for more information.

        Arguments:
            failure_strategy: Determines how to handle failures when storing attached
                Files and Folders under this Project and an exception occurs.
            synapse_client: If not passed in and caching was not disabled by
                `Synapse.allow_client_caching(False)` this will use the last created
                instance from the Synapse class constructor.

        Returns:
            The project object.

        Example: Using this method to update the description
            Store the project to Synapse using ID

                project = await Project(id="syn123", description="new").store_async()

            Store the project to Synapse using Name

                project = await Project(name="my_project", description="new").store_async()

        Raises:
            ValueError: If the project name is not set.
        """
        if not self.name and not self.id:
            raise ValueError("Project ID or Name is required")

        if (
            self.create_or_update
            and not self._last_persistent_instance
            and (
                existing_project_id := await get_id(
                    entity=self, synapse_client=synapse_client, failure_strategy=None
                )
            )
            and (
                existing_project := await Project(id=existing_project_id).get_async(
                    synapse_client=synapse_client
                )
            )
        ):
            merge_dataclass_entities(source=existing_project, destination=self)
        trace.get_current_span().set_attributes(
            {
                "synapse.name": self.name or "",
                "synapse.id": self.id or "",
            }
        )
        if self.has_changed:
            synapse_project = Synapse_Project(
                id=self.id,
                etag=self.etag,
                name=self.name,
                description=self.description,
                alias=self.alias,
                parentId=self.parent_id,
            )
            delete_none_keys(synapse_project)
            entity = await store_entity(
                resource=self,
                entity=synapse_project,
                synapse_client=synapse_client,
            )
            self.fill_from_dict(synapse_project=entity, set_annotations=False)

        await store_entity_components(
            root_resource=self,
            failure_strategy=failure_strategy,
            synapse_client=synapse_client,
        )

        self._set_last_persistent_instance()
        Synapse.get_client(synapse_client=synapse_client).logger.debug(
            f"Saved Project {self.name}, id: {self.id}"
        )

        return self

    @otel_trace_method(
        method_to_trace_name=lambda self, **kwargs: f"Project_Get: ID: {self.id}, Name: {self.name}"
    )
    async def get_async(
        self,
        *,
        synapse_client: Optional[Synapse] = None,
    ) -> "Project":
        """Get the project metadata from Synapse.

        Arguments:
            synapse_client: If not passed in and caching was not disabled by
                `Synapse.allow_client_caching(False)` this will use the last created
                instance from the Synapse class constructor.

        Returns:
            The project object.

        Example: Using this method
            Retrieve the project from Synapse using ID

                project = await Project(id="syn123").get_async()

            Retrieve the project from Synapse using Name

                project = await Project(name="my_project").get_async()

        Raises:
            ValueError: If the project ID or Name is not set.
            SynapseNotFoundError: If the project is not found in Synapse.
        """
        entity_id = await get_id(entity=self, synapse_client=synapse_client)

        await get_from_entity_factory(
            entity_to_update=self,
            synapse_id_or_path=entity_id,
            synapse_client=synapse_client,
        )

        self._set_last_persistent_instance()
        return self

    @otel_trace_method(
        method_to_trace_name=lambda self, **kwargs: f"Project_Delete: {self.id}, Name: {self.name}"
    )
    async def delete_async(self, *, synapse_client: Optional[Synapse] = None) -> None:
        """Delete the project from Synapse.

        Arguments:
            synapse_client: If not passed in and caching was not disabled by
                `Synapse.allow_client_caching(False)` this will use the last created
                instance from the Synapse class constructor.

        Returns:
            None

        Example: Using this method
            Delete the project from Synapse using ID

                await Project(id="syn123").delete_async()

            Delete the project from Synapse using Name

                await Project(name="my_project").delete_async()

        Raises:
            ValueError: If the project ID or Name is not set.
            SynapseNotFoundError: If the project is not found in Synapse.
        """
        entity_id = await get_id(entity=self, synapse_client=synapse_client)

        loop = asyncio.get_event_loop()
        await loop.run_in_executor(
            None,
            lambda: Synapse.get_client(synapse_client=synapse_client).delete(
                obj=entity_id,
            ),
        )

    @otel_trace_method(
        method_to_trace_name=lambda self, **kwargs: f"Project_Copy: {self.id}"
    )
    async def copy_async(
        self,
        destination_id: str,
        copy_annotations: bool = True,
        copy_wiki: bool = True,
        exclude_types: Optional[List[str]] = None,
        file_update_existing: bool = False,
        file_copy_activity: Union[str, None] = "traceback",
        *,
        synapse_client: Optional[Synapse] = None,
    ) -> "Project":
        """
        You must have already created the Project you will be copying to. It will have
        it's own Synapse ID and unique name that you will use as the destination_id.


        Copy the project to another Synapse project. This will recursively copy all
        Tables, Links, Files, and Folders within the project.

        Arguments:
            destination_id: Synapse ID of a project to copy to.
            copy_annotations: True to copy the annotations.
            copy_wiki: True to copy the wiki pages.
            exclude_types: A list of entity types ['file', 'table', 'link'] which
                determines which entity types to not copy. Defaults to an empty list.
            file_update_existing: When the destination has a file that has the same
                name, users can choose to update that file.
            file_copy_activity: Has three options to set the activity of the copied file:

                    - traceback: Creates a copy of the source files Activity.
                    - existing: Link to the source file's original Activity (if it exists)
                    - None: No activity is set
            synapse_client: If not passed in and caching was not disabled by
                `Synapse.allow_client_caching(False)` this will use the last created
                instance from the Synapse class constructor.

        Returns:
            The copied project object.

        Example: Using this function
            Assuming you have a project with the ID "syn123" and you want to copy it to a
            project with the ID "syn456":

                new_instance = await Project(id="syn123").copy_async(destination_id="syn456")

            Copy the project but do not persist annotations:

                new_instance = await Project(id="syn123").copy_async(destination_id="syn456", copy_annotations=False)

        Raises:
            ValueError: If the project does not have an ID and destination_id to copy.
        """
        if not self.id or not destination_id:
            raise ValueError("The project must have an ID and destination_id to copy.")

        loop = asyncio.get_event_loop()

        syn = Synapse.get_client(synapse_client=synapse_client)
        source_and_destination = await loop.run_in_executor(
            None,
            lambda: copy(
                syn=syn,
                entity=self.id,
                destinationId=destination_id,
                excludeTypes=exclude_types or [],
                skipCopyAnnotations=not copy_annotations,
                skipCopyWikiPage=not copy_wiki,
                updateExisting=file_update_existing,
                setProvenance=file_copy_activity,
            ),
        )

        new_project_id = source_and_destination.get(self.id, None)
        if not new_project_id:
            raise SynapseError("Failed to copy project.")
        project_copy = await (
            await Project(id=new_project_id).get_async(synapse_client=syn)
        ).sync_from_synapse_async(
            download_file=False,
            synapse_client=synapse_client,
        )
        syn.logger.debug(f"Copied from project {self.id} to {destination_id}")
        return project_copy

Functions

get

get(*, synapse_client: Optional[Synapse] = None) -> Project

Get the project metadata from Synapse.

PARAMETER	DESCRIPTION
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Project	The project object.

Using this method

Retrieve the project from Synapse using ID

project = Project(id="syn123").get()

Retrieve the project from Synapse using Name

project = Project(name="my_project").get()

RAISES	DESCRIPTION
ValueError	If the project ID or Name is not set.
SynapseNotFoundError	If the project is not found in Synapse.

Source code in synapseclient/models/protocols/project_protocol.py

def get(
    self,
    *,
    synapse_client: Optional[Synapse] = None,
) -> "Project":
    """
    Get the project metadata from Synapse.

    Arguments:
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        The project object.

    Example: Using this method
        Retrieve the project from Synapse using ID

            project = Project(id="syn123").get()

        Retrieve the project from Synapse using Name

            project = Project(name="my_project").get()

    Raises:
        ValueError: If the project ID or Name is not set.
        SynapseNotFoundError: If the project is not found in Synapse.
    """
    return self

store

store(failure_strategy: FailureStrategy = LOG_EXCEPTION, *, synapse_client: Optional[Synapse] = None) -> Project

Store project, files, and folders to synapse. If you have any files or folders attached to this project they will be stored as well. You may attach files and folders to this project by setting the files and folders attributes.

By default the store operation will non-destructively update the project if you have not already retrieved the project from Synapse. If you have already retrieved the project from Synapse then the store operation will be destructive and will overwrite the project with the current state of this object. See the create_or_update attribute for more information.

PARAMETER	DESCRIPTION
failure_strategy	Determines how to handle failures when storing attached Files and Folders under this Project and an exception occurs. TYPE: FailureStrategy DEFAULT: LOG_EXCEPTION
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Project	The project object.

Using this method to update the description

Store the project to Synapse using ID

project = Project(id="syn123", description="new").store()

Store the project to Synapse using Name

project = Project(name="my_project", description="new").store()

RAISES	DESCRIPTION
ValueError	If the project name is not set.

Source code in synapseclient/models/protocols/project_protocol.py

def store(
    self,
    failure_strategy: FailureStrategy = FailureStrategy.LOG_EXCEPTION,
    *,
    synapse_client: Optional[Synapse] = None,
) -> "Project":
    """
    Store project, files, and folders to synapse. If you have any files or folders
    attached to this project they will be stored as well. You may attach files
    and folders to this project by setting the `files` and `folders` attributes.

    By default the store operation will non-destructively update the project if
    you have not already retrieved the project from Synapse. If you have already
    retrieved the project from Synapse then the store operation will be destructive
    and will overwrite the project with the current state of this object. See the
    `create_or_update` attribute for more information.

    Arguments:
        failure_strategy: Determines how to handle failures when storing attached
            Files and Folders under this Project and an exception occurs.
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        The project object.

    Example: Using this method to update the description
        Store the project to Synapse using ID

            project = Project(id="syn123", description="new").store()

        Store the project to Synapse using Name

            project = Project(name="my_project", description="new").store()

    Raises:
        ValueError: If the project name is not set.
    """
    return self

delete

delete(*, synapse_client: Optional[Synapse] = None) -> None

Delete the project from Synapse.

PARAMETER	DESCRIPTION
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
None	None

Using this method

Delete the project from Synapse using ID

Project(id="syn123").delete()

Delete the project from Synapse using Name

Project(name="my_project").delete()

RAISES	DESCRIPTION
ValueError	If the project ID or Name is not set.
SynapseNotFoundError	If the project is not found in Synapse.

Source code in synapseclient/models/protocols/project_protocol.py

def delete(self, *, synapse_client: Optional[Synapse] = None) -> None:
    """Delete the project from Synapse.

    Arguments:
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        None

    Example: Using this method
        Delete the project from Synapse using ID

            Project(id="syn123").delete()

        Delete the project from Synapse using Name

            Project(name="my_project").delete()

    Raises:
        ValueError: If the project ID or Name is not set.
        SynapseNotFoundError: If the project is not found in Synapse.
    """
    return None

sync_from_synapse

sync_from_synapse(path: Optional[str] = None, recursive: bool = True, download_file: bool = True, if_collision: str = COLLISION_OVERWRITE_LOCAL, failure_strategy: FailureStrategy = LOG_EXCEPTION, include_activity: bool = True, follow_link: bool = False, link_hops: int = 1, queue: Queue = None, include_types: Optional[List[str]] = None, *, synapse_client: Optional[Synapse] = None) -> Self

Sync this container and all possible sub-folders from Synapse. By default this will download the files that are found and it will populate the files and folders attributes with the found files and folders, along with all other entity types (tables, entityviews, etc.) present in the container. If you only want to retrieve the full tree of metadata about your container specify download_file as False.

This works similar to synapseutils.syncFromSynapse, however, this does not currently support the writing of data to a manifest TSV file. This will be a future enhancement.

Supports syncing Files, Folders, Tables, EntityViews, SubmissionViews, Datasets, DatasetCollections, MaterializedViews, and VirtualTables from Synapse. The metadata for these entity types will be populated in their respective attributes (files, folders, tables, entityviews, submissionviews, datasets, datasetcollections, materializedviews, virtualtables) if they are found within the container.

PARAMETER	DESCRIPTION
path	An optional path where the file hierarchy will be reproduced. If not specified the files will by default be placed in the synapseCache. TYPE: Optional[str] DEFAULT: None
recursive	Whether or not to recursively get the entire hierarchy of the folder and sub-folders. TYPE: bool DEFAULT: True
download_file	Whether to download the files found or not. TYPE: bool DEFAULT: True
if_collision	Determines how to handle file collisions. May be overwrite.local keep.local keep.both TYPE: str DEFAULT: COLLISION_OVERWRITE_LOCAL
failure_strategy	Determines how to handle failures when retrieving children under this Folder and an exception occurs. TYPE: FailureStrategy DEFAULT: LOG_EXCEPTION
include_activity	Whether to include the activity of the files. TYPE: bool DEFAULT: True
follow_link	Whether to follow a link entity or not. Links can be used to point at other Synapse entities. TYPE: bool DEFAULT: False
link_hops	The number of hops to follow the link. A number of 1 is used to prevent circular references. There is nothing in place to prevent infinite loops. Be careful if setting this above 1. TYPE: int DEFAULT: 1
queue	An optional queue to use to download files in parallel. TYPE: Queue DEFAULT: None
include_types	Must be a list of entity types (ie. ["folder","file"]) which can be found here TYPE: Optional[List[str]] DEFAULT: None
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Self	The object that was called on. This will be the same object that was called on to start the sync.

Using this function

Suppose I want to walk the immediate children of a folder without downloading the files:

from synapseclient import Synapse
from synapseclient.models import Folder

syn = Synapse()
syn.login()

my_folder = Folder(id="syn12345")
my_folder.sync_from_synapse(download_file=False, recursive=False)

for folder in my_folder.folders:
    print(folder.name)

for file in my_folder.files:
    print(file.name)

for table in my_folder.tables:
    print(table.name)

for dataset in my_folder.datasets:
    print(dataset.name)

Suppose I want to download the immediate children of a folder:

from synapseclient import Synapse
from synapseclient.models import Folder

syn = Synapse()
syn.login()

my_folder = Folder(id="syn12345")
my_folder.sync_from_synapse(path="/path/to/folder", recursive=False)

for folder in my_folder.folders:
    print(folder.name)

for file in my_folder.files:
    print(file.name)

Suppose I want to sync only specific entity types from a Project:

from synapseclient import Synapse
from synapseclient.models import Project

syn = Synapse()
syn.login()

my_project = Project(id="syn12345")
my_project.sync_from_synapse(
    path="/path/to/folder",
    include_types=["folder", "file", "table", "dataset"]
)

# Access different entity types
for table in my_project.tables:
    print(f"Table: {table.name}")

for dataset in my_project.datasets:
    print(f"Dataset: {dataset.name}")

Suppose I want to download all the children of a Project and all sub-folders and files:

from synapseclient import Synapse
from synapseclient.models import Project

syn = Synapse()
syn.login()

my_project = Project(id="syn12345")
my_project.sync_from_synapse(path="/path/to/folder")

RAISES	DESCRIPTION
ValueError	If the folder does not have an id set.

A sequence diagram for this method is as follows:

sequenceDiagram
    autonumber
    participant project_or_folder
    activate project_or_folder
    project_or_folder->>sync_from_synapse: Recursive search and download files
    activate sync_from_synapse
        opt Current instance not retrieved from Synapse
            sync_from_synapse->>project_or_folder: Call `.get()` method
            project_or_folder-->>sync_from_synapse: .
        end

        loop For each return of the generator
            sync_from_synapse->>client: call `.getChildren()` method
            client-->>sync_from_synapse: .
            note over sync_from_synapse: Append to a running list
        end

        loop For each child
            note over sync_from_synapse: Create all `pending_tasks` at current depth

            alt Child is File
                note over sync_from_synapse: Append `file.get()` method
            else Child is Folder
                note over sync_from_synapse: Append `folder.get()` method
                alt Recursive is True
                    note over sync_from_synapse: Append `folder.sync_from_synapse()` method
                end
            end
        end

        loop For each task in pending_tasks
            par `file.get()`
                sync_from_synapse->>File: Retrieve File metadata and Optionally download
                File->>client: `.get()`
                client-->>File: .
                File-->>sync_from_synapse: .
            and `folder.get()`
                sync_from_synapse->>Folder: Retrieve Folder metadataa
                Folder->>client: `.get()`
                client-->>Folder: .
                Folder-->>sync_from_synapse: .
            and `folder.sync_from_synapse()`
                note over sync_from_synapse: This is a recursive call to `sync_from_synapse`
                sync_from_synapse->>sync_from_synapse: Recursive call to `.sync_from_synapse()`
            end
        end

    deactivate sync_from_synapse
    deactivate project_or_folder

Source code in synapseclient/models/protocols/storable_container_protocol.py

def sync_from_synapse(
    self: Self,
    path: Optional[str] = None,
    recursive: bool = True,
    download_file: bool = True,
    if_collision: str = COLLISION_OVERWRITE_LOCAL,
    failure_strategy: FailureStrategy = FailureStrategy.LOG_EXCEPTION,
    include_activity: bool = True,
    follow_link: bool = False,
    link_hops: int = 1,
    queue: asyncio.Queue = None,
    include_types: Optional[List[str]] = None,
    *,
    synapse_client: Optional[Synapse] = None,
) -> Self:
    """
    Sync this container and all possible sub-folders from Synapse. By default this
    will download the files that are found and it will populate the
    `files` and `folders` attributes with the found files and folders, along with
    all other entity types (tables, entityviews, etc.) present in the container.
    If you only want to retrieve the full tree of metadata about your
    container specify `download_file` as False.

    This works similar to [synapseutils.syncFromSynapse][], however, this does not
    currently support the writing of data to a manifest TSV file. This will be a
    future enhancement.

    Supports syncing Files, Folders, Tables, EntityViews, SubmissionViews, Datasets,
    DatasetCollections, MaterializedViews, and VirtualTables from Synapse. The
    metadata for these entity types will be populated in their respective
    attributes (`files`, `folders`, `tables`, `entityviews`, `submissionviews`,
    `datasets`, `datasetcollections`, `materializedviews`, `virtualtables`) if
    they are found within the container.

    Arguments:
        path: An optional path where the file hierarchy will be reproduced. If not
            specified the files will by default be placed in the synapseCache.
        recursive: Whether or not to recursively get the entire hierarchy of the
            folder and sub-folders.
        download_file: Whether to download the files found or not.
        if_collision: Determines how to handle file collisions. May be

            - `overwrite.local`
            - `keep.local`
            - `keep.both`
        failure_strategy: Determines how to handle failures when retrieving children
            under this Folder and an exception occurs.
        include_activity: Whether to include the activity of the files.
        follow_link: Whether to follow a link entity or not. Links can be used to
            point at other Synapse entities.
        link_hops: The number of hops to follow the link. A number of 1 is used to
            prevent circular references. There is nothing in place to prevent
            infinite loops. Be careful if setting this above 1.
        queue: An optional queue to use to download files in parallel.
        include_types: Must be a list of entity types (ie. ["folder","file"]) which
            can be found
            [here](https://rest-docs.synapse.org/rest/org/sagebionetworks/repo/model/EntityType.html)
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        The object that was called on. This will be the same object that was called on
            to start the sync.

    Example: Using this function
        Suppose I want to walk the immediate children of a folder without downloading the files:

        ```python
        from synapseclient import Synapse
        from synapseclient.models import Folder

        syn = Synapse()
        syn.login()

        my_folder = Folder(id="syn12345")
        my_folder.sync_from_synapse(download_file=False, recursive=False)

        for folder in my_folder.folders:
            print(folder.name)

        for file in my_folder.files:
            print(file.name)

        for table in my_folder.tables:
            print(table.name)

        for dataset in my_folder.datasets:
            print(dataset.name)
        ```

        Suppose I want to download the immediate children of a folder:

        ```python
        from synapseclient import Synapse
        from synapseclient.models import Folder

        syn = Synapse()
        syn.login()

        my_folder = Folder(id="syn12345")
        my_folder.sync_from_synapse(path="/path/to/folder", recursive=False)

        for folder in my_folder.folders:
            print(folder.name)

        for file in my_folder.files:
            print(file.name)
        ```

        Suppose I want to sync only specific entity types from a Project:

        ```python
        from synapseclient import Synapse
        from synapseclient.models import Project

        syn = Synapse()
        syn.login()

        my_project = Project(id="syn12345")
        my_project.sync_from_synapse(
            path="/path/to/folder",
            include_types=["folder", "file", "table", "dataset"]
        )

        # Access different entity types
        for table in my_project.tables:
            print(f"Table: {table.name}")

        for dataset in my_project.datasets:
            print(f"Dataset: {dataset.name}")
        ```

        Suppose I want to download all the children of a Project and all sub-folders and files:

        ```python
        from synapseclient import Synapse
        from synapseclient.models import Project

        syn = Synapse()
        syn.login()

        my_project = Project(id="syn12345")
        my_project.sync_from_synapse(path="/path/to/folder")
        ```


    Raises:
        ValueError: If the folder does not have an id set.


    A sequence diagram for this method is as follows:

    ```mermaid
    sequenceDiagram
        autonumber
        participant project_or_folder
        activate project_or_folder
        project_or_folder->>sync_from_synapse: Recursive search and download files
        activate sync_from_synapse
            opt Current instance not retrieved from Synapse
                sync_from_synapse->>project_or_folder: Call `.get()` method
                project_or_folder-->>sync_from_synapse: .
            end

            loop For each return of the generator
                sync_from_synapse->>client: call `.getChildren()` method
                client-->>sync_from_synapse: .
                note over sync_from_synapse: Append to a running list
            end

            loop For each child
                note over sync_from_synapse: Create all `pending_tasks` at current depth

                alt Child is File
                    note over sync_from_synapse: Append `file.get()` method
                else Child is Folder
                    note over sync_from_synapse: Append `folder.get()` method
                    alt Recursive is True
                        note over sync_from_synapse: Append `folder.sync_from_synapse()` method
                    end
                end
            end

            loop For each task in pending_tasks
                par `file.get()`
                    sync_from_synapse->>File: Retrieve File metadata and Optionally download
                    File->>client: `.get()`
                    client-->>File: .
                    File-->>sync_from_synapse: .
                and `folder.get()`
                    sync_from_synapse->>Folder: Retrieve Folder metadataa
                    Folder->>client: `.get()`
                    client-->>Folder: .
                    Folder-->>sync_from_synapse: .
                and `folder.sync_from_synapse()`
                    note over sync_from_synapse: This is a recursive call to `sync_from_synapse`
                    sync_from_synapse->>sync_from_synapse: Recursive call to `.sync_from_synapse()`
                end
            end

        deactivate sync_from_synapse
        deactivate project_or_folder
    ```

    """
    return self

flatten_file_list

flatten_file_list() -> List[File]

Recursively loop over all of the already retrieved files and folders and return a list of all files in the container.

RETURNS	DESCRIPTION
List[File]	A list of all files in the container.

Source code in synapseclient/models/mixins/storable_container.py

def flatten_file_list(self) -> List["File"]:
    """
    Recursively loop over all of the already retrieved files and folders and return
    a list of all files in the container.

    Returns:
        A list of all files in the container.
    """
    files = []
    for file in self.files:
        files.append(file)
    for folder in self.folders:
        files.extend(folder.flatten_file_list())
    return files

map_directory_to_all_contained_files

map_directory_to_all_contained_files(root_path: str) -> Dict[str, List[File]]

Recursively loop over all of the already retrieved files and folders. Then return back a dictionary where the key is the path to the directory at each level. The value is a list of all files in that directory AND all files in the child directories.

This is used during the creation of the manifest TSV file during the syncFromSynapse utility function.

Using this function

Returning back a dict with 2 keys:

 Given:
 root_folder
 ├── sub_folder
 │   ├── file1.txt
 │   └── file2.txt

 Returns:
 {
     "root_folder": [file1, file2],
     "root_folder/sub_folder": [file1, file2]
 }

Returning back a dict with 3 keys:

 Given:
 root_folder
 ├── sub_folder_1
 │   ├── file1.txt
 ├── sub_folder_2
 │   └── file2.txt

 Returns:
 {
     "root_folder": [file1, file2],
     "root_folder/sub_folder_1": [file1]
     "root_folder/sub_folder_2": [file2]
 }

PARAMETER	DESCRIPTION
root_path	The root path where the top level files are stored. TYPE: str

RETURNS	DESCRIPTION
Dict[str, List[File]]	A dictionary where the key is the path to the directory at each level. The value is a list of all files in that directory AND all files in the child directories.

Source code in synapseclient/models/mixins/storable_container.py

def map_directory_to_all_contained_files(
    self, root_path: str
) -> Dict[str, List["File"]]:
    """
    Recursively loop over all of the already retrieved files and folders. Then
    return back a dictionary where the key is the path to the directory at each
    level. The value is a list of all files in that directory AND all files in
    the child directories.

    This is used during the creation of the manifest TSV file during the
    syncFromSynapse utility function.

    Example: Using this function
       Returning back a dict with 2 keys:

            Given:
            root_folder
            ├── sub_folder
            │   ├── file1.txt
            │   └── file2.txt

            Returns:
            {
                "root_folder": [file1, file2],
                "root_folder/sub_folder": [file1, file2]
            }


       Returning back a dict with 3 keys:

            Given:
            root_folder
            ├── sub_folder_1
            │   ├── file1.txt
            ├── sub_folder_2
            │   └── file2.txt

            Returns:
            {
                "root_folder": [file1, file2],
                "root_folder/sub_folder_1": [file1]
                "root_folder/sub_folder_2": [file2]
            }

    Arguments:
        root_path: The root path where the top level files are stored.

    Returns:
        A dictionary where the key is the path to the directory at each level. The
            value is a list of all files in that directory AND all files in the child
            directories.
    """
    directory_map = {}
    directory_map.update({root_path: self.flatten_file_list()})

    for folder in self.folders:
        directory_map.update(
            **folder.map_directory_to_all_contained_files(
                root_path=os.path.join(root_path, folder.name)
            )
        )

    return directory_map

get_permissions

get_permissions(*, synapse_client: Optional[Synapse] = None) -> Permissions

Get the permissions that the caller has on an Entity.

PARAMETER	DESCRIPTION
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Permissions	A Permissions object

Using this function:

Getting permissions for a Synapse Entity

from synapseclient import Synapse
from synapseclient.models import File

syn = Synapse()
syn.login()

permissions = File(id="syn123").get_permissions()

Getting access types list from the Permissions object

permissions.access_types

Source code in synapseclient/models/protocols/access_control_protocol.py

def get_permissions(
    self,
    *,
    synapse_client: Optional[Synapse] = None,
) -> "Permissions":
    """
    Get the [permissions][synapseclient.core.models.permission.Permissions]
    that the caller has on an Entity.

    Arguments:
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        A Permissions object


    Example: Using this function:
        Getting permissions for a Synapse Entity

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File

        syn = Synapse()
        syn.login()

        permissions = File(id="syn123").get_permissions()
        ```

        Getting access types list from the Permissions object

        ```
        permissions.access_types
        ```
    """
    return self

get_acl

get_acl(principal_id: int = None, check_benefactor: bool = True, *, synapse_client: Optional[Synapse] = None) -> List[str]

Get the ACL that a user or group has on an Entity.

Note: If the entity does not have local sharing settings, or ACL set directly on it, this will look up the ACL on the benefactor of the entity. The benefactor is the entity that the current entity inherits its permissions from. The benefactor is usually the parent entity, but it can be any ancestor in the hierarchy. For example, a newly created Project will be its own benefactor, while a new FileEntity's benefactor will start off as its containing Project or Folder. If the entity already has local sharing settings, the benefactor would be itself.

PARAMETER	DESCRIPTION
principal_id	Identifier of a user or group (defaults to PUBLIC users) TYPE: int DEFAULT: None
check_benefactor	If True (default), check the benefactor for the entity to get the ACL. If False, only check the entity itself. This is useful for checking the ACL of an entity that has local sharing settings, but you want to check the ACL of the entity itself and not the benefactor it may inherit from. TYPE: bool DEFAULT: True
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
List[str]	An array containing some combination of ['READ', 'UPDATE', 'CREATE', 'DELETE', 'DOWNLOAD', 'MODERATE', 'CHANGE_PERMISSIONS', 'CHANGE_SETTINGS'] or an empty array

Source code in synapseclient/models/protocols/access_control_protocol.py

def get_acl(
    self,
    principal_id: int = None,
    check_benefactor: bool = True,
    *,
    synapse_client: Optional[Synapse] = None,
) -> List[str]:
    """
    Get the [ACL][synapseclient.core.models.permission.Permissions.access_types]
    that a user or group has on an Entity.

    Note: If the entity does not have local sharing settings, or ACL set directly
    on it, this will look up the ACL on the benefactor of the entity. The
    benefactor is the entity that the current entity inherits its permissions from.
    The benefactor is usually the parent entity, but it can be any ancestor in the
    hierarchy. For example, a newly created Project will be its own benefactor,
    while a new FileEntity's benefactor will start off as its containing Project or
    Folder. If the entity already has local sharing settings, the benefactor would
    be itself.

    Arguments:
        principal_id: Identifier of a user or group (defaults to PUBLIC users)
        check_benefactor: If True (default), check the benefactor for the entity
            to get the ACL. If False, only check the entity itself.
            This is useful for checking the ACL of an entity that has local sharing
            settings, but you want to check the ACL of the entity itself and not
            the benefactor it may inherit from.
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        An array containing some combination of
            ['READ', 'UPDATE', 'CREATE', 'DELETE', 'DOWNLOAD', 'MODERATE',
            'CHANGE_PERMISSIONS', 'CHANGE_SETTINGS']
            or an empty array
    """
    return [""]

list_acl

list_acl(recursive: bool = False, include_container_content: bool = False, target_entity_types: Optional[List[str]] = None, log_tree: bool = False, *, synapse_client: Optional[Synapse] = None, _progress_bar: Optional[tqdm] = None) -> AclListResult

List the Access Control Lists (ACLs) for this entity and optionally its children.

This function returns the local sharing settings for the entity and optionally its children. It provides a mapping of all ACLs for the given container/entity.

Important Note: This function returns the LOCAL sharing settings only, not the effective permissions that each Synapse User ID/Team has on the entities. More permissive permissions could be granted via a Team that the user has access to that has permissions on the entity, or through inheritance from parent entities.

PARAMETER	DESCRIPTION
recursive	If True and the entity is a container (e.g., Project or Folder), recursively process child containers. Note that this must be used with include_container_content=True to have any effect. Setting recursive=True with include_container_content=False will raise a ValueError. Only works on classes that support the sync_from_synapse_async method. TYPE: bool DEFAULT: False
include_container_content	If True, include ACLs from contents directly within containers (files and folders inside self). This must be set to True for recursive to have any effect. Defaults to False. TYPE: bool DEFAULT: False
target_entity_types	Specify which entity types to process when listing ACLs. Allowed values are "folder" and "file" (case-insensitive). If None, defaults to ["folder", "file"]. TYPE: Optional[List[str]] DEFAULT: None
log_tree	If True, logs the ACL results to console in ASCII tree format showing entity hierarchies and their ACL permissions in a tree-like structure. Defaults to False. TYPE: bool DEFAULT: False
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None
_progress_bar	Internal parameter. Progress bar instance to use for updates when called recursively. Should not be used by external callers. TYPE: Optional[tqdm] DEFAULT: None

RETURNS	DESCRIPTION
AclListResult	An AclListResult object containing a structured representation of ACLs where:
AclListResult	entity_acls: A list of EntityAcl objects, each representing one entity's ACL
AclListResult	Each EntityAcl contains acl_entries (a list of AclEntry objects)
AclListResult	Each AclEntry contains the principal_id and their list of permissions

RAISES	DESCRIPTION
ValueError	If the entity does not have an ID or if an invalid entity type is provided.
SynapseHTTPError	If there are permission issues accessing ACLs.
Exception	For any other errors that may occur during the process.

List ACLs for a single entity

from synapseclient import Synapse
from synapseclient.models import File

syn = Synapse()
syn.login()

acl_result = File(id="syn123").list_acl()
print(acl_result)

# Access entity ACLs (entity_acls is a list, not a dict)
for entity_acl in acl_result.all_entity_acls:
    if entity_acl.entity_id == "syn123":
        # Access individual ACL entries
        for acl_entry in entity_acl.acl_entries:
            if acl_entry.principal_id == "273948":
                print(f"Principal 273948 has permissions: {acl_entry.permissions}")

# I can also access the ACL for the file itself
print(acl_result.entity_acl)

print(acl_result)

List ACLs recursively for a folder and all its children

from synapseclient import Synapse
from synapseclient.models import Folder

syn = Synapse()
syn.login()

acl_result = Folder(id="syn123").list_acl(
    recursive=True,
    include_container_content=True
)

# Access each entity's ACL (entity_acls is a list)
for entity_acl in acl_result.all_entity_acls:
    print(f"Entity {entity_acl.entity_id} has ACL with {len(entity_acl.acl_entries)} principals")

# I can also access the ACL for the folder itself
print(acl_result.entity_acl)

# List ACLs for only folder entities
folder_acl_result = Folder(id="syn123").list_acl(
    recursive=True,
    include_container_content=True,
    target_entity_types=["folder"]
)

List ACLs with ASCII tree visualization

When log_tree=True, the ACLs will be logged in a tree format. Additionally, the ascii_tree attribute of the AclListResult will contain the ASCII tree representation of the ACLs.

from synapseclient import Synapse
from synapseclient.models import Folder

syn = Synapse()
syn.login()

acl_result = Folder(id="syn123").list_acl(
    recursive=True,
    include_container_content=True,
    log_tree=True, # Enable ASCII tree logging
)

# The ASCII tree representation of the ACLs will also be available
# in acl_result.ascii_tree
print(acl_result.ascii_tree)

Source code in synapseclient/models/protocols/access_control_protocol.py

def list_acl(
    self,
    recursive: bool = False,
    include_container_content: bool = False,
    target_entity_types: Optional[List[str]] = None,
    log_tree: bool = False,
    *,
    synapse_client: Optional[Synapse] = None,
    _progress_bar: Optional[tqdm] = None,  # Internal parameter for recursive calls
) -> "AclListResult":
    """
    List the Access Control Lists (ACLs) for this entity and optionally its children.

    This function returns the local sharing settings for the entity and optionally
    its children. It provides a mapping of all ACLs for the given container/entity.

    **Important Note:** This function returns the LOCAL sharing settings only, not
    the effective permissions that each Synapse User ID/Team has on the entities.
    More permissive permissions could be granted via a Team that the user has access
    to that has permissions on the entity, or through inheritance from parent entities.

    Arguments:
        recursive: If True and the entity is a container (e.g., Project or Folder),
            recursively process child containers. Note that this must be used with
            include_container_content=True to have any effect. Setting recursive=True
            with include_container_content=False will raise a ValueError.
            Only works on classes that support the `sync_from_synapse_async` method.
        include_container_content: If True, include ACLs from contents directly within
            containers (files and folders inside self). This must be set to
            True for recursive to have any effect. Defaults to False.
        target_entity_types: Specify which entity types to process when listing ACLs.
            Allowed values are "folder" and "file" (case-insensitive).
            If None, defaults to ["folder", "file"].
        log_tree: If True, logs the ACL results to console in ASCII tree format showing
            entity hierarchies and their ACL permissions in a tree-like structure.
            Defaults to False.
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.
        _progress_bar: Internal parameter. Progress bar instance to use for updates
            when called recursively. Should not be used by external callers.

    Returns:
        An AclListResult object containing a structured representation of ACLs where:
        - entity_acls: A list of EntityAcl objects, each representing one entity's ACL
        - Each EntityAcl contains acl_entries (a list of AclEntry objects)
        - Each AclEntry contains the principal_id and their list of permissions

    Raises:
        ValueError: If the entity does not have an ID or if an invalid entity type is provided.
        SynapseHTTPError: If there are permission issues accessing ACLs.
        Exception: For any other errors that may occur during the process.

    Example: List ACLs for a single entity
        ```python
        from synapseclient import Synapse
        from synapseclient.models import File

        syn = Synapse()
        syn.login()

        acl_result = File(id="syn123").list_acl()
        print(acl_result)

        # Access entity ACLs (entity_acls is a list, not a dict)
        for entity_acl in acl_result.all_entity_acls:
            if entity_acl.entity_id == "syn123":
                # Access individual ACL entries
                for acl_entry in entity_acl.acl_entries:
                    if acl_entry.principal_id == "273948":
                        print(f"Principal 273948 has permissions: {acl_entry.permissions}")

        # I can also access the ACL for the file itself
        print(acl_result.entity_acl)

        print(acl_result)

        ```

    Example: List ACLs recursively for a folder and all its children
        ```python
        from synapseclient import Synapse
        from synapseclient.models import Folder

        syn = Synapse()
        syn.login()

        acl_result = Folder(id="syn123").list_acl(
            recursive=True,
            include_container_content=True
        )

        # Access each entity's ACL (entity_acls is a list)
        for entity_acl in acl_result.all_entity_acls:
            print(f"Entity {entity_acl.entity_id} has ACL with {len(entity_acl.acl_entries)} principals")

        # I can also access the ACL for the folder itself
        print(acl_result.entity_acl)

        # List ACLs for only folder entities
        folder_acl_result = Folder(id="syn123").list_acl(
            recursive=True,
            include_container_content=True,
            target_entity_types=["folder"]
        )
        ```

    Example: List ACLs with ASCII tree visualization
        When `log_tree=True`, the ACLs will be logged in a tree format. Additionally,
        the `ascii_tree` attribute of the AclListResult will contain the ASCII tree
        representation of the ACLs.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import Folder

        syn = Synapse()
        syn.login()

        acl_result = Folder(id="syn123").list_acl(
            recursive=True,
            include_container_content=True,
            log_tree=True, # Enable ASCII tree logging
        )

        # The ASCII tree representation of the ACLs will also be available
        # in acl_result.ascii_tree
        print(acl_result.ascii_tree)
        ```
    """
    return AclListResult()

set_permissions

set_permissions(principal_id: int = None, access_type: List[str] = None, modify_benefactor: bool = False, warn_if_inherits: bool = True, overwrite: bool = True, *, synapse_client: Optional[Synapse] = None) -> Dict[str, Union[str, list]]

Sets permission that a user or group has on an Entity. An Entity may have its own ACL or inherit its ACL from a benefactor.

PARAMETER	DESCRIPTION
principal_id	Identifier of a user or group. 273948 is for all registered Synapse users and 273949 is for public access. None implies public access. TYPE: int DEFAULT: None
access_type	Type of permission to be granted. One or more of CREATE, READ, DOWNLOAD, UPDATE, DELETE, CHANGE_PERMISSIONS. Defaults to ['READ', 'DOWNLOAD'] TYPE: List[str] DEFAULT: None
modify_benefactor	Set as True when modifying a benefactor's ACL. The term 'benefactor' is used to indicate which Entity an Entity inherits its ACL from. For example, a newly created Project will be its own benefactor, while a new FileEntity's benefactor will start off as its containing Project. If the entity already has local sharing settings the benefactor would be itself. It may also be the immediate parent, somewhere in the parent tree, or the project itself. TYPE: bool DEFAULT: False
warn_if_inherits	When modify_benefactor is True, this does not have any effect. When modify_benefactor is False, and warn_if_inherits is True, a warning log message is produced if the benefactor for the entity you passed into the function is not itself, i.e., it's the parent folder, or another entity in the parent tree. TYPE: bool DEFAULT: True
overwrite	By default this function overwrites existing permissions for the specified user. Set this flag to False to add new permissions non-destructively. TYPE: bool DEFAULT: True
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Dict[str, Union[str, list]]	An Access Control List object

Setting permissions

Grant all registered users download access

from synapseclient import Synapse
from synapseclient.models import File

syn = Synapse()
syn.login()

File(id="syn123").set_permissions(principal_id=273948, access_type=['READ','DOWNLOAD'])

Grant the public view access

from synapseclient import Synapse
from synapseclient.models import File

syn = Synapse()
syn.login()

File(id="syn123").set_permissions(principal_id=273949, access_type=['READ'])

Source code in synapseclient/models/protocols/access_control_protocol.py

def set_permissions(
    self,
    principal_id: int = None,
    access_type: List[str] = None,
    modify_benefactor: bool = False,
    warn_if_inherits: bool = True,
    overwrite: bool = True,
    *,
    synapse_client: Optional[Synapse] = None,
) -> Dict[str, Union[str, list]]:
    """
    Sets permission that a user or group has on an Entity.
    An Entity may have its own ACL or inherit its ACL from a benefactor.

    Arguments:
        principal_id: Identifier of a user or group. `273948` is for all
            registered Synapse users and `273949` is for public access.
            None implies public access.
        access_type: Type of permission to be granted. One or more of CREATE,
            READ, DOWNLOAD, UPDATE, DELETE, CHANGE_PERMISSIONS.

            **Defaults to ['READ', 'DOWNLOAD']**
        modify_benefactor: Set as True when modifying a benefactor's ACL. The term
            'benefactor' is used to indicate which Entity an Entity inherits its
            ACL from. For example, a newly created Project will be its own
            benefactor, while a new FileEntity's benefactor will start off as its
            containing Project. If the entity already has local sharing settings
            the benefactor would be itself. It may also be the immediate parent,
            somewhere in the parent tree, or the project itself.
        warn_if_inherits: When `modify_benefactor` is True, this does not have any
            effect. When `modify_benefactor` is False, and `warn_if_inherits` is
            True, a warning log message is produced if the benefactor for the
            entity you passed into the function is not itself, i.e., it's the
            parent folder, or another entity in the parent tree.
        overwrite: By default this function overwrites existing permissions for
            the specified user. Set this flag to False to add new permissions
            non-destructively.
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        An Access Control List object

    Example: Setting permissions
        Grant all registered users download access

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File

        syn = Synapse()
        syn.login()

        File(id="syn123").set_permissions(principal_id=273948, access_type=['READ','DOWNLOAD'])
        ```

        Grant the public view access

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File

        syn = Synapse()
        syn.login()

        File(id="syn123").set_permissions(principal_id=273949, access_type=['READ'])
        ```
    """
    return {}

delete_permissions

delete_permissions(include_self: bool = True, include_container_content: bool = False, recursive: bool = False, target_entity_types: Optional[List[str]] = None, dry_run: bool = False, show_acl_details: bool = True, show_files_in_containers: bool = True, *, benefactor_tracker: Optional[BenefactorTracker] = None, synapse_client: Optional[Synapse] = None) -> None

Delete the entire Access Control List (ACL) for a given Entity. This is not scoped to a specific user or group, but rather removes all permissions associated with the Entity. After this operation, the Entity will inherit permissions from its benefactor, which is typically its parent entity or the Project it belongs to.

In order to remove permissions for a specific user or group, you should use the set_permissions method with the access_type set to an empty list.

By default, Entities such as FileEntity and Folder inherit their permission from their containing Project. For such Entities the Project is the Entity's 'benefactor'. This permission inheritance can be overridden by creating an ACL for the Entity. When this occurs the Entity becomes its own benefactor and all permission are determined by its own ACL.

If the ACL of an Entity is deleted, then its benefactor will automatically be set to its parent's benefactor.

Special notice for Projects: The ACL for a Project cannot be deleted, you must individually update or revoke the permissions for each user or group.

PARAMETER	DESCRIPTION
include_self	If True (default), delete the ACL of the current entity. If False, skip deleting the ACL of the current entity. TYPE: bool DEFAULT: True
include_container_content	If True, delete ACLs from contents directly within containers (files and folders inside self). This must be set to True for recursive to have any effect. Defaults to False. TYPE: bool DEFAULT: False
recursive	If True and the entity is a container (e.g., Project or Folder), recursively process child containers. Note that this must be used with include_container_content=True to have any effect. Setting recursive=True with include_container_content=False will raise a ValueError. Only works on classes that support the sync_from_synapse_async method. TYPE: bool DEFAULT: False
target_entity_types	Specify which entity types to process when deleting ACLs. Allowed values are "folder" and "file" (case-insensitive). If None, defaults to ["folder", "file"]. This does not affect the entity type of the current entity, which is always processed if include_self=True. TYPE: Optional[List[str]] DEFAULT: None
dry_run	If True, log the changes that would be made instead of actually performing the deletions. When enabled, all ACL deletion operations are simulated and logged at info level. Defaults to False. TYPE: bool DEFAULT: False
show_acl_details	When dry_run=True, controls whether current ACL details are displayed for entities that will have their permissions changed. If True (default), shows detailed ACL information. If False, hides ACL details for cleaner output. Has no effect when dry_run=False. TYPE: bool DEFAULT: True
show_files_in_containers	When dry_run=True, controls whether files within containers are displayed in the preview. If True (default), shows all files. If False, hides files when their only change is benefactor inheritance (but still shows files with local ACLs being deleted). Has no effect when dry_run=False. TYPE: bool DEFAULT: True
benefactor_tracker	Optional tracker for managing benefactor relationships. Used for recursive functionality to track which entities will be affected TYPE: Optional[BenefactorTracker] DEFAULT: None
synapse_client	If not passed in and caching was not disabled by Synapse.allow_client_caching(False) this will use the last created instance from the Synapse class constructor. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
None	None

RAISES	DESCRIPTION
ValueError	If the entity does not have an ID or if an invalid entity type is provided.
SynapseHTTPError	If there are permission issues or if the entity already inherits permissions.
Exception	For any other errors that may occur during the process.

Note: The caller must be granted ACCESS_TYPE.CHANGE_PERMISSIONS on the Entity to call this method.

Delete permissions for a single entity

from synapseclient import Synapse
from synapseclient.models import File

syn = Synapse()
syn.login()

File(id="syn123").delete_permissions()

Delete permissions recursively for a folder and all its children

from synapseclient import Synapse
from synapseclient.models import Folder

syn = Synapse()
syn.login()

# Delete permissions for this folder only (does not affect children)
Folder(id="syn123").delete_permissions()

# Delete permissions for all files and folders directly within this folder,
# but not the folder itself
Folder(id="syn123").delete_permissions(
    include_self=False,
    include_container_content=True
)

# Delete permissions for all items in the entire hierarchy (folders and their files)
# Both recursive and include_container_content must be True
Folder(id="syn123").delete_permissions(
    recursive=True,
    include_container_content=True
)

# Delete permissions only for folder entities within this folder recursively
# and their contents
Folder(id="syn123").delete_permissions(
    recursive=True,
    include_container_content=True,
    target_entity_types=["folder"]
)

# Delete permissions only for files within this folder and all subfolders
Folder(id="syn123").delete_permissions(
    include_self=False,
    recursive=True,
    include_container_content=True,
    target_entity_types=["file"]
)

# Dry run example: Log what would be deleted without making changes
Folder(id="syn123").delete_permissions(
    recursive=True,
    include_container_content=True,
    dry_run=True
)

Source code in synapseclient/models/protocols/access_control_protocol.py

def delete_permissions(
    self,
    include_self: bool = True,
    include_container_content: bool = False,
    recursive: bool = False,
    target_entity_types: Optional[List[str]] = None,
    dry_run: bool = False,
    show_acl_details: bool = True,
    show_files_in_containers: bool = True,
    *,
    benefactor_tracker: Optional["BenefactorTracker"] = None,
    synapse_client: Optional[Synapse] = None,
) -> None:
    """
    Delete the entire Access Control List (ACL) for a given Entity. This is not
    scoped to a specific user or group, but rather removes all permissions
    associated with the Entity. After this operation, the Entity will inherit
    permissions from its benefactor, which is typically its parent entity or
    the Project it belongs to.

    In order to remove permissions for a specific user or group, you
    should use the `set_permissions` method with the `access_type` set to
    an empty list.

    By default, Entities such as FileEntity and Folder inherit their permission from
    their containing Project. For such Entities the Project is the Entity's 'benefactor'.
    This permission inheritance can be overridden by creating an ACL for the Entity.
    When this occurs the Entity becomes its own benefactor and all permission are
    determined by its own ACL.

    If the ACL of an Entity is deleted, then its benefactor will automatically be set
    to its parent's benefactor.

    **Special notice for Projects:** The ACL for a Project cannot be deleted, you
    must individually update or revoke the permissions for each user or group.

    Arguments:
        include_self: If True (default), delete the ACL of the current entity.
            If False, skip deleting the ACL of the current entity.
        include_container_content: If True, delete ACLs from contents directly within
            containers (files and folders inside self). This must be set to
            True for recursive to have any effect. Defaults to False.
        recursive: If True and the entity is a container (e.g., Project or Folder),
            recursively process child containers. Note that this must be used with
            include_container_content=True to have any effect. Setting recursive=True
            with include_container_content=False will raise a ValueError.
            Only works on classes that support the `sync_from_synapse_async` method.
        target_entity_types: Specify which entity types to process when deleting ACLs.
            Allowed values are "folder" and "file" (case-insensitive).
            If None, defaults to ["folder", "file"]. This does not affect the
            entity type of the current entity, which is always processed if
            `include_self=True`.
        dry_run: If True, log the changes that would be made instead of actually
            performing the deletions. When enabled, all ACL deletion operations are
            simulated and logged at info level. Defaults to False.
        show_acl_details: When dry_run=True, controls whether current ACL details are
            displayed for entities that will have their permissions changed. If True (default),
            shows detailed ACL information. If False, hides ACL details for cleaner output.
            Has no effect when dry_run=False.
        show_files_in_containers: When dry_run=True, controls whether files within containers
            are displayed in the preview. If True (default), shows all files. If False, hides
            files when their only change is benefactor inheritance (but still shows files with
            local ACLs being deleted). Has no effect when dry_run=False.
        benefactor_tracker: Optional tracker for managing benefactor relationships.
            Used for recursive functionality to track which entities will be affected
        synapse_client: If not passed in and caching was not disabled by
            `Synapse.allow_client_caching(False)` this will use the last created
            instance from the Synapse class constructor.

    Returns:
        None

    Raises:
        ValueError: If the entity does not have an ID or if an invalid entity type is provided.
        SynapseHTTPError: If there are permission issues or if the entity already inherits permissions.
        Exception: For any other errors that may occur during the process.

    Note: The caller must be granted ACCESS_TYPE.CHANGE_PERMISSIONS on the Entity to
    call this method.

    Example: Delete permissions for a single entity
        ```python
        from synapseclient import Synapse
        from synapseclient.models import File

        syn = Synapse()
        syn.login()

        File(id="syn123").delete_permissions()

        ```

    Example: Delete permissions recursively for a folder and all its children
        ```python
        from synapseclient import Synapse
        from synapseclient.models import Folder

        syn = Synapse()
        syn.login()

        # Delete permissions for this folder only (does not affect children)
        Folder(id="syn123").delete_permissions()

        # Delete permissions for all files and folders directly within this folder,
        # but not the folder itself
        Folder(id="syn123").delete_permissions(
            include_self=False,
            include_container_content=True
        )

        # Delete permissions for all items in the entire hierarchy (folders and their files)
        # Both recursive and include_container_content must be True
        Folder(id="syn123").delete_permissions(
            recursive=True,
            include_container_content=True
        )

        # Delete permissions only for folder entities within this folder recursively
        # and their contents
        Folder(id="syn123").delete_permissions(
            recursive=True,
            include_container_content=True,
            target_entity_types=["folder"]
        )

        # Delete permissions only for files within this folder and all subfolders
        Folder(id="syn123").delete_permissions(
            include_self=False,
            recursive=True,
            include_container_content=True,
            target_entity_types=["file"]
        )

        # Dry run example: Log what would be deleted without making changes
        Folder(id="syn123").delete_permissions(
            recursive=True,
            include_container_content=True,
            dry_run=True
        )
        ```
    """
    return None

bind_schema

bind_schema(json_schema_uri: str, *, enable_derived_annotations: Optional[bool] = False, synapse_client: Optional[Synapse] = None) -> JSONSchemaBinding

Bind a JSON schema to the entity.

PARAMETER	DESCRIPTION
json_schema_uri	The URI of the JSON schema to bind to the entity. TYPE: str
enable_derived_annotations	If true, enable derived annotations. Defaults to False. TYPE: Optional[bool] DEFAULT: False
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
JSONSchemaBinding	An object containing details about the JSON schema binding.

Using this function

Binding JSON schema to a folder or a file. This example expects that you have a Synapse project to use, and a file to upload. Set the PROJECT_NAME and FILE_PATH variables to your project name and file path respectively.

from synapseclient import Synapse
from synapseclient.models import File, Folder

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")


my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()

# Bind JSON schema to the folder
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Result from binding schema to folder: {bound_schema}")

# Bind the same schema to a file
example_file = File(
    path=FILE_PATH,  # Replace with your test file path
    parent_id=test_folder.id,
).store()

bound_schema_file = example_file.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Result from binding schema to file: {bound_schema_file}")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def bind_schema(
    self,
    json_schema_uri: str,
    *,
    enable_derived_annotations: Optional[bool] = False,
    synapse_client: Optional["Synapse"] = None,
) -> "JSONSchemaBinding":
    """
    Bind a JSON schema to the entity.

    Arguments:
        json_schema_uri: The URI of the JSON schema to bind to the entity.
        enable_derived_annotations: If true, enable derived annotations. Defaults to False.
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Returns:
        An object containing details about the JSON schema binding.

    Example: Using this function
        Binding JSON schema to a folder or a file. This example expects that you
        have a Synapse project to use, and a file to upload. Set the `PROJECT_NAME`
        and `FILE_PATH` variables to your project name and file path respectively.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")


        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()

        # Bind JSON schema to the folder
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Result from binding schema to folder: {bound_schema}")

        # Bind the same schema to a file
        example_file = File(
            path=FILE_PATH,  # Replace with your test file path
            parent_id=test_folder.id,
        ).store()

        bound_schema_file = example_file.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Result from binding schema to file: {bound_schema_file}")
        ```
    """
    return JSONSchemaBinding()

get_schema

get_schema(*, synapse_client: Optional[Synapse] = None) -> JSONSchemaBinding

Get the JSON schema bound to the entity.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
JSONSchemaBinding	An object containing details about the bound JSON schema.

Using this function

Retrieving the bound JSON schema from a folder or file. This example demonstrates how to get existing schema bindings from entities that already have schemas bound. Set the PROJECT_NAME variable to your project name.

from synapseclient import Synapse
from synapseclient.models import File, Folder

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
    print(f"Created new schema: {SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder first
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder: {bound_schema}")

# Create and bind schema to a file
example_file = File(
    path=FILE_PATH,  # Replace with your test file path
    parent_id=test_folder.id,
).store()

bound_schema_file = example_file.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to file: {bound_schema_file}")

# Retrieve the bound schema from the folder
retrieved_folder_schema = test_folder.get_schema()
print(f"Retrieved schema from folder: {retrieved_folder_schema}")

# Retrieve the bound schema from the file
retrieved_file_schema = example_file.get_schema()
print(f"Retrieved schema from file: {retrieved_file_schema}")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def get_schema(
    self, *, synapse_client: Optional["Synapse"] = None
) -> "JSONSchemaBinding":
    """
    Get the JSON schema bound to the entity.

    Arguments:
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Returns:
        An object containing details about the bound JSON schema.

    Example: Using this function
        Retrieving the bound JSON schema from a folder or file. This example demonstrates
        how to get existing schema bindings from entities that already have schemas bound.
        Set the `PROJECT_NAME` variable to your project name.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
            print(f"Created new schema: {SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder first
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder: {bound_schema}")

        # Create and bind schema to a file
        example_file = File(
            path=FILE_PATH,  # Replace with your test file path
            parent_id=test_folder.id,
        ).store()

        bound_schema_file = example_file.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to file: {bound_schema_file}")

        # Retrieve the bound schema from the folder
        retrieved_folder_schema = test_folder.get_schema()
        print(f"Retrieved schema from folder: {retrieved_folder_schema}")

        # Retrieve the bound schema from the file
        retrieved_file_schema = example_file.get_schema()
        print(f"Retrieved schema from file: {retrieved_file_schema}")
        ```
    """
    return JSONSchemaBinding()

unbind_schema

unbind_schema(*, synapse_client: Optional[Synapse] = None) -> None

Unbind the JSON schema from the entity.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

Using this function

Unbinding a JSON schema from a folder or file. This example demonstrates how to remove schema bindings from entities. Assumes entities already have schemas bound. Set the PROJECT_NAME variable to your project name.

from synapseclient import Synapse
from synapseclient.models import File, Folder

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
    print(f"Created new schema: {SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder first
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder: {bound_schema}")

# Create and bind schema to a file
example_file = File(
    path=FILE_PATH,  # Replace with your test file path
    parent_id=test_folder.id,
).store()

bound_schema_file = example_file.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to file: {bound_schema_file}")

# Unbind the schema from the folder
test_folder.unbind_schema()
print("Successfully unbound schema from folder")

# Unbind the schema from the file
example_file.unbind_schema()
print("Successfully unbound schema from file")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def unbind_schema(self, *, synapse_client: Optional["Synapse"] = None) -> None:
    """
    Unbind the JSON schema from the entity.

    Arguments:
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Example: Using this function
        Unbinding a JSON schema from a folder or file. This example demonstrates
        how to remove schema bindings from entities. Assumes entities already have
        schemas bound. Set the `PROJECT_NAME` variable to your project name.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
            print(f"Created new schema: {SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder first
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder: {bound_schema}")

        # Create and bind schema to a file
        example_file = File(
            path=FILE_PATH,  # Replace with your test file path
            parent_id=test_folder.id,
        ).store()

        bound_schema_file = example_file.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to file: {bound_schema_file}")

        # Unbind the schema from the folder
        test_folder.unbind_schema()
        print("Successfully unbound schema from folder")

        # Unbind the schema from the file
        example_file.unbind_schema()
        print("Successfully unbound schema from file")
        ```
    """

validate_schema

validate_schema(*, synapse_client: Optional[Synapse] = None) -> Union[JSONSchemaValidation, InvalidJSONSchemaValidation]

Validate the entity against the bound JSON schema.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
Union[JSONSchemaValidation, InvalidJSONSchemaValidation]	The validation results.

Using this function

Validating a folder or file against the bound JSON schema. This example demonstrates how to validate entities with annotations against their bound schemas. Requires entities to have schemas already bound. Set the PROJECT_NAME variable to your project name.

from synapseclient import Synapse
from synapseclient.models import File, Folder
import time

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
    print(f"Created new schema: {SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder: {bound_schema}")

# Create and bind schema to a file
example_file = File(
    path=FILE_PATH,  # Replace with your test file path
    parent_id=test_folder.id,
).store()

bound_schema_file = example_file.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to file: {bound_schema_file}")

# Validate the folder entity against the bound schema
test_folder.annotations = {"foo": "test_value", "bar": 42}  # Example annotations
test_folder.store()
print("Added annotations to folder and stored")
time.sleep(2)  # Allow time for processing

validation_response = test_folder.validate_schema()
print(f"Folder validation response: {validation_response}")

# Validate the file entity against the bound schema
example_file.annotations = {"foo": "test_value", "bar": 43}  # Example annotations
example_file.store()
print("Added annotations to file and stored")
time.sleep(2)  # Allow time for processing

validation_response_file = example_file.validate_schema()
print(f"File validation response: {validation_response_file}")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def validate_schema(
    self, *, synapse_client: Optional["Synapse"] = None
) -> Union["JSONSchemaValidation", "InvalidJSONSchemaValidation"]:
    """
    Validate the entity against the bound JSON schema.

    Arguments:
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Returns:
        The validation results.

    Example: Using this function
        Validating a folder or file against the bound JSON schema. This example demonstrates
        how to validate entities with annotations against their bound schemas. Requires entities
        to have schemas already bound. Set the `PROJECT_NAME` variable to your project name.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder
        import time

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
            print(f"Created new schema: {SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder: {bound_schema}")

        # Create and bind schema to a file
        example_file = File(
            path=FILE_PATH,  # Replace with your test file path
            parent_id=test_folder.id,
        ).store()

        bound_schema_file = example_file.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to file: {bound_schema_file}")

        # Validate the folder entity against the bound schema
        test_folder.annotations = {"foo": "test_value", "bar": 42}  # Example annotations
        test_folder.store()
        print("Added annotations to folder and stored")
        time.sleep(2)  # Allow time for processing

        validation_response = test_folder.validate_schema()
        print(f"Folder validation response: {validation_response}")

        # Validate the file entity against the bound schema
        example_file.annotations = {"foo": "test_value", "bar": 43}  # Example annotations
        example_file.store()
        print("Added annotations to file and stored")
        time.sleep(2)  # Allow time for processing

        validation_response_file = example_file.validate_schema()
        print(f"File validation response: {validation_response_file}")
        ```
    """
    return InvalidJSONSchemaValidation() or JSONSchemaValidation()

get_schema_derived_keys

get_schema_derived_keys(*, synapse_client: Optional[Synapse] = None) -> JSONSchemaDerivedKeys

Retrieve derived JSON schema keys for the entity.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
JSONSchemaDerivedKeys	An object containing the derived keys for the entity.

Using this function

Retrieving derived keys from a folder or file. This example demonstrates how to get derived annotation keys from schemas with constant values. Set the PROJECT_NAME variable to your project name.

from synapseclient import Synapse
from synapseclient.models import File, Folder

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
DERIVED_TEST_SCHEMA_NAME = "myTestDerivedSchema"  # replace with your derived schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{DERIVED_TEST_SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(DERIVED_TEST_SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "baz": {"type": "string", "const": "example_value"},  # Example constant for derived annotation
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, DERIVED_TEST_SCHEMA_NAME, VERSION)
    print(f"Created new derived schema: {DERIVED_TEST_SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder with derived annotations: {bound_schema}")

# Create and bind schema to a file
example_file = File(
    path=FILE_PATH,  # Replace with your test file path
    parent_id=test_folder.id,
).store()

bound_schema_file = example_file.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to file with derived annotations: {bound_schema_file}")

# Get the derived keys from the bound schema of the folder
test_folder.annotations = {"foo": "test_value_new", "bar": 42}  # Example annotations
test_folder.store()
print("Added annotations to folder and stored")

derived_keys = test_folder.get_schema_derived_keys()
print(f"Derived keys from folder: {derived_keys}")

# Get the derived keys from the bound schema of the file
example_file.annotations = {"foo": "test_value_new", "bar": 43}  # Example annotations
example_file.store()
print("Added annotations to file and stored")

derived_keys_file = example_file.get_schema_derived_keys()
print(f"Derived keys from file: {derived_keys_file}")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def get_schema_derived_keys(
    self, *, synapse_client: Optional["Synapse"] = None
) -> "JSONSchemaDerivedKeys":
    """
    Retrieve derived JSON schema keys for the entity.

    Arguments:
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Returns:
        An object containing the derived keys for the entity.

    Example: Using this function
        Retrieving derived keys from a folder or file. This example demonstrates
        how to get derived annotation keys from schemas with constant values.
        Set the `PROJECT_NAME` variable to your project name.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        DERIVED_TEST_SCHEMA_NAME = "myTestDerivedSchema"  # replace with your derived schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{DERIVED_TEST_SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(DERIVED_TEST_SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "baz": {"type": "string", "const": "example_value"},  # Example constant for derived annotation
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, DERIVED_TEST_SCHEMA_NAME, VERSION)
            print(f"Created new derived schema: {DERIVED_TEST_SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder with derived annotations: {bound_schema}")

        # Create and bind schema to a file
        example_file = File(
            path=FILE_PATH,  # Replace with your test file path
            parent_id=test_folder.id,
        ).store()

        bound_schema_file = example_file.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to file with derived annotations: {bound_schema_file}")

        # Get the derived keys from the bound schema of the folder
        test_folder.annotations = {"foo": "test_value_new", "bar": 42}  # Example annotations
        test_folder.store()
        print("Added annotations to folder and stored")

        derived_keys = test_folder.get_schema_derived_keys()
        print(f"Derived keys from folder: {derived_keys}")

        # Get the derived keys from the bound schema of the file
        example_file.annotations = {"foo": "test_value_new", "bar": 43}  # Example annotations
        example_file.store()
        print("Added annotations to file and stored")

        derived_keys_file = example_file.get_schema_derived_keys()
        print(f"Derived keys from file: {derived_keys_file}")
        ```
    """
    return JSONSchemaDerivedKeys()

get_schema_validation_statistics

get_schema_validation_statistics(*, synapse_client: Optional[Synapse] = None) -> JSONSchemaValidationStatistics

Get validation statistics for a container entity.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

RETURNS	DESCRIPTION
JSONSchemaValidationStatistics	The validation statistics.

Using this function

Retrieving validation statistics for a folder. This example demonstrates how to get validation statistics for a container entity after creating entities with various validation states. Set the PROJECT_NAME variable to your project name.

from synapseclient import Synapse
from synapseclient.models import File, Folder
import time

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "baz": {"type": "string", "const": "example_value"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
    print(f"Created new schema: {SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder: {bound_schema}")

# Create files within the folder with invalid annotations to generate statistics
invalid_file1 = File(
    path=FILE_PATH,  # assumes you have something here or adjust path
    parent_id=test_folder.id
)
invalid_file1.annotations = {"foo": 123, "bar": "not_an_integer"}  # both invalid
invalid_file1.store()
print("Created file with invalid annotations")
time.sleep(2)  # Allow time for processing

# Get schema validation statistics
stats = test_folder.get_schema_validation_statistics()
print(f"Validation statistics: {stats}")

Source code in synapseclient/models/protocols/json_schema_protocol.py

def get_schema_validation_statistics(
    self, *, synapse_client: Optional["Synapse"] = None
) -> "JSONSchemaValidationStatistics":
    """
    Get validation statistics for a container entity.

    Arguments:
        synapse_client: The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Returns:
        The validation statistics.

    Example: Using this function
        Retrieving validation statistics for a folder. This example demonstrates
        how to get validation statistics for a container entity after creating
        entities with various validation states. Set the `PROJECT_NAME` variable to your project name.

        ```python
        from synapseclient import Synapse
        from synapseclient.models import File, Folder
        import time

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "baz": {"type": "string", "const": "example_value"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
            print(f"Created new schema: {SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder: {bound_schema}")

        # Create files within the folder with invalid annotations to generate statistics
        invalid_file1 = File(
            path=FILE_PATH,  # assumes you have something here or adjust path
            parent_id=test_folder.id
        )
        invalid_file1.annotations = {"foo": 123, "bar": "not_an_integer"}  # both invalid
        invalid_file1.store()
        print("Created file with invalid annotations")
        time.sleep(2)  # Allow time for processing

        # Get schema validation statistics
        stats = test_folder.get_schema_validation_statistics()
        print(f"Validation statistics: {stats}")
        ```
    """
    return JSONSchemaValidationStatistics()

get_invalid_validation

get_invalid_validation(*, synapse_client: Optional[Synapse] = None) -> Generator[InvalidJSONSchemaValidation, None, None]

Get invalid JSON schema validation results for a container entity.

PARAMETER	DESCRIPTION
synapse_client	The Synapse client instance. If not provided, the last created instance from the Synapse class constructor will be used. TYPE: Optional[Synapse] DEFAULT: None

YIELDS	DESCRIPTION
InvalidJSONSchemaValidation	An object containing the validation response, all validation messages, and the validation exception details.

Using this function

Retrieving invalid validation results for a folder. This example demonstrates how to get detailed invalid validation results for child entities within a container. Set the PROJECT_NAME variable to your project name.

import time
from synapseclient import Synapse
from synapseclient.models import File, Folder

syn = Synapse()
syn.login()

# Define Project and JSON schema info
PROJECT_NAME = "test_json_schema_project"  # replace with your project name
FILE_PATH = "~/Sample.txt"  # replace with your test file path

PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
ORG_NAME = "UniqueOrg"  # replace with your organization name
SCHEMA_NAME = "myTestSchema"  # replace with your schema name
FOLDER_NAME = "test_script_folder"
VERSION = "0.0.1"
SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

# Create organization (if not already created)
js = syn.service("json_schema")
all_orgs = js.list_organizations()
for org in all_orgs:
    if org["name"] == ORG_NAME:
        print(f"Organization {ORG_NAME} already exists: {org}")
        break
else:
    print(f"Creating organization {ORG_NAME}.")
    created_organization = js.create_organization(ORG_NAME)
    print(f"Created organization: {created_organization}")

my_test_org = js.JsonSchemaOrganization(ORG_NAME)
test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

if not test_schema:
    # Create the schema (if not already created)
    schema_definition = {
        "$id": "mySchema",
        "type": "object",
        "properties": {
            "foo": {"type": "string"},
            "baz": {"type": "string", "const": "example_value"},
            "bar": {"type": "integer"},
        },
        "required": ["foo"]
    }
    test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
    print(f"Created new schema: {SCHEMA_NAME}")

# Create a test folder
test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
test_folder.store()
print(f"Created test folder: {FOLDER_NAME}")

# Bind JSON schema to the folder
bound_schema = test_folder.bind_schema(
    json_schema_uri=SCHEMA_URI,
    enable_derived_annotations=True
)
print(f"Bound schema to folder: {bound_schema}")

# Create files within the folder with invalid annotations to generate invalid results
invalid_file1 = File(
    path=FILE_PATH,  # assumes you have something here or adjust path
    parent_id=test_folder.id
)
invalid_file1.annotations = {"foo": 123, "bar": "not_an_integer"}  # both invalid
invalid_file1.store()
print("Created file with invalid annotations")
time.sleep(2)  # Allow time for processing

# Get invalid validation results
invalid_results = test_folder.get_invalid_validation(synapse_client=syn)
print(f"Invalid validation items found:")
for child in invalid_results:
    print(f"Invalid validation item: {child}")

Source code in synapseclient/models/mixins/json_schema.py

def get_invalid_validation(
    self, *, synapse_client: Optional["Synapse"] = None
) -> Generator[InvalidJSONSchemaValidation, None, None]:
    """
    Get invalid JSON schema validation results for a container entity.

    Arguments:
        synapse_client (Optional[Synapse], optional): The Synapse client instance. If not provided,
            the last created instance from the Synapse class constructor will be used.

    Yields:
        An object containing the validation response, all validation messages,
                                     and the validation exception details.

    Example: Using this function
        Retrieving invalid validation results for a folder. This example demonstrates
        how to get detailed invalid validation results for child entities within a container.
        Set the `PROJECT_NAME` variable to your project name.

        ```python
        import time
        from synapseclient import Synapse
        from synapseclient.models import File, Folder

        syn = Synapse()
        syn.login()

        # Define Project and JSON schema info
        PROJECT_NAME = "test_json_schema_project"  # replace with your project name
        FILE_PATH = "~/Sample.txt"  # replace with your test file path

        PROJECT_ID = syn.findEntityId(name=PROJECT_NAME)
        ORG_NAME = "UniqueOrg"  # replace with your organization name
        SCHEMA_NAME = "myTestSchema"  # replace with your schema name
        FOLDER_NAME = "test_script_folder"
        VERSION = "0.0.1"
        SCHEMA_URI = f"{ORG_NAME}-{SCHEMA_NAME}-{VERSION}"

        # Create organization (if not already created)
        js = syn.service("json_schema")
        all_orgs = js.list_organizations()
        for org in all_orgs:
            if org["name"] == ORG_NAME:
                print(f"Organization {ORG_NAME} already exists: {org}")
                break
        else:
            print(f"Creating organization {ORG_NAME}.")
            created_organization = js.create_organization(ORG_NAME)
            print(f"Created organization: {created_organization}")

        my_test_org = js.JsonSchemaOrganization(ORG_NAME)
        test_schema = my_test_org.get_json_schema(SCHEMA_NAME)

        if not test_schema:
            # Create the schema (if not already created)
            schema_definition = {
                "$id": "mySchema",
                "type": "object",
                "properties": {
                    "foo": {"type": "string"},
                    "baz": {"type": "string", "const": "example_value"},
                    "bar": {"type": "integer"},
                },
                "required": ["foo"]
            }
            test_schema = my_test_org.create_json_schema(schema_definition, SCHEMA_NAME, VERSION)
            print(f"Created new schema: {SCHEMA_NAME}")

        # Create a test folder
        test_folder = Folder(name=FOLDER_NAME, parent_id=PROJECT_ID)
        test_folder.store()
        print(f"Created test folder: {FOLDER_NAME}")

        # Bind JSON schema to the folder
        bound_schema = test_folder.bind_schema(
            json_schema_uri=SCHEMA_URI,
            enable_derived_annotations=True
        )
        print(f"Bound schema to folder: {bound_schema}")

        # Create files within the folder with invalid annotations to generate invalid results
        invalid_file1 = File(
            path=FILE_PATH,  # assumes you have something here or adjust path
            parent_id=test_folder.id
        )
        invalid_file1.annotations = {"foo": 123, "bar": "not_an_integer"}  # both invalid
        invalid_file1.store()
        print("Created file with invalid annotations")
        time.sleep(2)  # Allow time for processing

        # Get invalid validation results
        invalid_results = test_folder.get_invalid_validation(synapse_client=syn)
        print(f"Invalid validation items found:")
        for child in invalid_results:
            print(f"Invalid validation item: {child}")
        ```
    """
    gen = get_invalid_json_schema_validation_sync(
        synapse_client=synapse_client, synapse_id=self.id
    )

    for item in gen:
        yield InvalidJSONSchemaValidation(
            validation_response=JSONSchemaValidation(
                object_id=item.get("objectId", None),
                object_type=item.get("objectType", None),
                object_etag=item.get("objectEtag", None),
                id=item.get("schema$id", None),
                is_valid=item.get("isValid", None),
                validated_on=item.get("validatedOn", None),
            ),
            validation_error_message=item.get("validationErrorMessage", None),
            all_validation_messages=item.get("allValidationMessages", []),
            validation_exception=ValidationException(
                pointer_to_violation=item.get("validationException", {}).get(
                    "pointerToViolation", None
                ),
                message=item.get("validationException", {}).get("message", None),
                schema_location=item.get("validationException", {}).get(
                    "schemaLocation", None
                ),
                causing_exceptions=[
                    CausingException(
                        keyword=ce.get("keyword", None),
                        pointer_to_violation=ce.get("pointerToViolation", None),
                        message=ce.get("message", None),
                        schema_location=ce.get("schemaLocation", None),
                        causing_exceptions=[
                            CausingException(
                                keyword=nce.get("keyword", None),
                                pointer_to_violation=nce.get(
                                    "pointerToViolation", None
                                ),
                                message=nce.get("message", None),
                                schema_location=nce.get("schemaLocation", None),
                            )
                            for nce in ce.get("causingExceptions", [])
                        ],
                    )
                    for ce in item.get("validationException", {}).get(
                        "causingExceptions", []
                    )
                ],
            ),
        )